Protein Prospector
from the University of California San Francisco
Mascot
from Matrix Science
OMSSA from NCBI
X!Tandem from The Global Proteome Machine Organization
Standards for Proteomics Data
Series of MIAPE (minimum information about a proteomics experiment) guidelines from HUPO in Nature Biotech
Proteomics standards initiative from HUPO
Editorials (1, 2, 3, DRAFT PUBLICATION GUIDELINES) from Molecular and Cellular Proteomics (PDF files)
Commentary
from Nature Biotechnology
Post-translational modification mass reference tables
http://www.abrf.org/index.cfm/dm.home?AvgMass=all
http://home.earthlink.net/~jsgaravelli/RESIDlis.HTML
http://us.expasy.org/tools/findmod/findmod_masses.html
Find Modification Tool - ExPASy
http://us.expasy.org/tools/findmod/
Proteome Society
http://www.proteome.org/
Proteomics Glossary
http://www.genomicglossaries.com/content/proteomics.asp
Michigan Proteome Consortium
http://www.proteomeconsortium.org/
ExPASy
http://www.expasy.ch/
PROWL
http://prowl.rockefeller.edu/
Association of Biomolecular Resource Facilities
http://www.abrf.org/
American Society for Mass Spectrometry
http://www.asms.org/
Campus Research Core Facilities
http://bondlsc.missouri.edu/research/cores
The University of Missouri - Columbia
http://www.missouri.edu/
The Life Sciences Center
http://bondlsc.missouri.edu